6CPY | pdb_00006cpy

Structure of apo GRMZM2G135359 pseudokinase

PDB DOI: https://doi.org/10.2210/pdb6CPY/pdb

Classification: TRANSFERASE
Organism(s): Zea mays
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2018-03-14 Released: 2018-04-04
Deposition Author(s): Aquino, B., Counago, R.M., Godoi, P.H.C., Massirer, K.B., Elkins, J.M., Arruda, P., Structural Genomics Consortium (SGC)
Funding Organization(s): Sao Paulo Research Foundation (FAPESP)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free:
0.215 (Depositor), 0.220 (DCC)
R-Value Work:
0.199 (Depositor), 0.208 (DCC)
R-Value Observed:
0.200 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 6CPY

This is version 1.3 of the entry. See complete history.

Literature

Structure of apo GRMZM2G135359 pseudokinase

Aquino, B., Counago, R.M., Godoi, P.H.C., Massirer, K.B., Elkins, J.M., Arruda, P.

To be published.

Macromolecule Content

Total Structure Weight: 69.57 kDa
Atom Count: 4,432
Modeled Residue Count: 539
Deposited Residue Count: 616
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GRMZM2G135359 pseudokinase	A, B	308	Zea mays	Mutation(s): 0
UniProt
Find proteins for C0P4K9 (Zea mays) Explore C0P4K9 Go to UniProtKB: C0P4K9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	C0P4K9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.215 (Depositor), 0.220 (DCC)
R-Value Work: 0.199 (Depositor), 0.208 (DCC)
R-Value Observed: 0.200 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.492	α = 90
b = 61.496	β = 90
c = 144.764	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2018-04-04

Deposition Author(s):

Structural Genomics Consortium (SGC)

Funding Organization	Location	Grant Number
Sao Paulo Research Foundation (FAPESP)	Brazil	13/50724-5

Revision History (Full details and data files)

Version 1.0: 2018-04-04
Type: Initial release
Version 1.1: 2019-04-17
Changes: Author supporting evidence, Data collection
Version 1.2: 2020-01-01
Changes: Author supporting evidence
Version 1.3: 2023-10-04
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.