6COE

AtHNL enantioselectivity mutant At-A9-H7 Apo Y13C,Y121L,P126F,L128W,C131T,F179L,A209I with benzaldehyde, MANDELIC ACID NITRILE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.844 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.154 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

AtHNL enantioselectivity mutants

Jones, B.J.Desrouleaux, R.Kazlauskas, R.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Alpha-hydroxynitrile lyase
A, B
260Arabidopsis thalianaMutation(s): 7 
Gene Names: HNL (MES5)
EC: 4.1.2.10
Find proteins for Q9LFT6 (Arabidopsis thaliana)
Go to UniProtKB:  Q9LFT6
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MNN
Query on MNN

Download SDF File 
Download CCD File 
A, B
(S)-MANDELIC ACID NITRILE
(S)-HYDROXY(PHENYL)ACETONITRILE
C8 H7 N O
NNICRUQPODTGRU-MRVPVSSYSA-N
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
MXN
Query on MXN

Download SDF File 
Download CCD File 
A, B
(2R)-hydroxy(phenyl)ethanenitrile
(R)-mandelonitrile
C8 H7 N O
NNICRUQPODTGRU-QMMMGPOBSA-N
 Ligand Interaction
HBX
Query on HBX

Download SDF File 
Download CCD File 
A, B
benzaldehyde
C7 H6 O
HUMNYLRZRPPJDN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.844 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.154 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 50.024α = 90.00
b = 87.231β = 90.00
c = 123.283γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
REFMACrefinement
DENZOdata reduction
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited States5R01GM102205

Revision History 

  • Version 1.0: 2019-03-20
    Type: Initial release
  • Version 1.1: 2019-04-10
    Type: Author supporting evidence, Data collection