6CO6

Crystal structure of Rhodococcus jostii RHA1 IpdAB


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.701 Å
  • R-Value Free: 0.192 
  • R-Value Work: 0.165 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

IpdAB, a virulence factor inMycobacterium tuberculosis, is a cholesterol ring-cleaving hydrolase.

Crowe, A.M.Workman, S.D.Watanabe, N.Worrall, L.J.Strynadka, N.C.J.Eltis, L.D.

(2018) Proc. Natl. Acad. Sci. U.S.A. 115: E3378-E3387


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Probable CoA-transferase alpha subunit
A
308Rhodococcus jostii (strain RHA1)Mutation(s): 0 
Find proteins for Q0S7P9 (Rhodococcus jostii (strain RHA1))
Go to UniProtKB:  Q0S7P9
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Probable CoA-transferase beta subunit
B
253Rhodococcus jostii (strain RHA1)Mutation(s): 0 
Find proteins for Q0S7Q0 (Rhodococcus jostii (strain RHA1))
Go to UniProtKB:  Q0S7Q0
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.701 Å
  • R-Value Free: 0.192 
  • R-Value Work: 0.165 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 68.910α = 90.00
b = 68.910β = 90.00
c = 241.370γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-03-28
    Type: Initial release
  • Version 1.1: 2018-04-11
    Type: Data collection, Database references
  • Version 1.2: 2018-04-25
    Type: Data collection, Database references
  • Version 1.3: 2018-06-13
    Type: Data collection, Structure summary