6CNL

Crystal Structure of H105A PGAM5 Dodecamer


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.223 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Functional role of PGAM5 multimeric assemblies and their polymerization into filaments.

Ruiz, K.Thaker, T.M.Agnew, C.Miller-Vedam, L.Trenker, R.Herrera, C.Ingaramo, M.Toso, D.Frost, A.Jura, N.

(2019) Nat Commun 10: 531-531


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Serine/threonine-protein phosphatase PGAM5, mitochondrial
A, C, L, J, F, H, K, D, B, I, G, E
223Homo sapiensMutation(s): 1 
Gene Names: PGAM5
EC: 3.1.3.16
Find proteins for Q96HS1 (Homo sapiens)
Go to Gene View: PGAM5
Go to UniProtKB:  Q96HS1
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
PGAM5 Multimerization Motif Peptide
M, O, X, V, R, T, W, P, N, U, S, Q
14N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H, I, J, K, L, P
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.223 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 49.372α = 90.00
b = 242.538β = 90.00
c = 272.458γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
Aimlessdata scaling
PHENIXrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-02-13
    Type: Initial release