6CNH

Human PRPF4B in complex with Rebastinib


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.182 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of the human PRPF4B in complex with Rebastinib

Godoi, P.H.C.Santiago, A.S.Ramos, P.Z.Silva, P.N.B.Righetto, G.L.Guimaraes, C.R.W.Massirer, K.B.Arruda, P.Elkins, J.M.Edwards, A.M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Serine/threonine-protein kinase PRP4 homolog
A
351Homo sapiensMutation(s): 0 
Gene Names: PRPF4B (KIAA0536, PRP4, PRP4H, PRP4K)
EC: 2.7.11.1
Find proteins for Q13523 (Homo sapiens)
Go to Gene View: PRPF4B
Go to UniProtKB:  Q13523
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
919
Query on 919

Download SDF File 
Download CCD File 
A
4-[4-({[3-tert-butyl-1-(quinolin-6-yl)-1H-pyrazol-5-yl]carbamoyl}amino)-3-fluorophenoxy]-N-methylpyridine-2-carboxamide
DCC-2036
C30 H28 F N7 O3
WVXNSAVVKYZVOE-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.182 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 85.169α = 90.00
b = 75.661β = 92.82
c = 68.075γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
PHASERphasing
XDSdata reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Sao Paulo Research FoundationBrazil13/50724-5

Revision History 

  • Version 1.0: 2018-03-28
    Type: Initial release
  • Version 1.1: 2019-04-17
    Type: Author supporting evidence, Data collection