6CMI

Crystal Structure of the Hendra Virus Attachment G Glycoprotein Bound to a Potent Cross-Reactive Neutralizing Human Monoclonal Antibody m102.3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.72 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.196 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of the Hendra virus attachment G glycoprotein bound to a potent cross-reactive neutralizing human monoclonal antibody.

Xu, K.Rockx, B.Xie, Y.DeBuysscher, B.L.Fusco, D.L.Zhu, Z.Chan, Y.P.Xu, Y.Luu, T.Cer, R.Z.Feldmann, H.Mokashi, V.Dimitrov, D.S.Bishop-Lilly, K.A.Broder, C.C.Nikolov, D.B.

(2013) PLoS Pathog. 9: e1003684


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Glycoprotein G
B
428Hendra virus (isolate Horse/Autralia/Hendra/1994)Mutation(s): 0 
Gene Names: G
Find proteins for O89343 (Hendra virus (isolate Horse/Autralia/Hendra/1994))
Go to UniProtKB:  O89343
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
m102.3 light chain
C
214N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
IgG Heavy chain
D
235N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MAN
Query on MAN

Download SDF File 
Download CCD File 
B
ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
 Ligand Interaction
FUC
Query on FUC

Download SDF File 
Download CCD File 
B
ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
 Ligand Interaction
BMA
Query on BMA

Download SDF File 
Download CCD File 
B
BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
B
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.72 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.196 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 89.275α = 90.00
b = 148.533β = 90.00
c = 185.485γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
HKL-2000data scaling
HKL-2000data reduction
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-03-05 
  • Released Date: 2018-04-18 
  • Deposition Author(s): Xu, K., Nikolov, D.

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesAI054715
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesAI077995
National Institutes of Health/National Institute of Neurological Disorders and StrokeUnited StatesNS38586

Revision History 

  • Version 1.0: 2018-04-18
    Type: Initial release
  • Version 1.1: 2018-04-25
    Type: Data collection, Derived calculations, Structure summary
  • Version 1.2: 2019-02-20
    Type: Author supporting evidence, Data collection