6CKZ

Human caspase-3 in complex with Ac-DW3-KE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.171 
  • R-Value Work: 0.153 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Selective cell-permeable inhibitor establishes need of caspase-3 for rapid apoptosis

Solania, A.T.Gonzalez, G.E.Wolan, D.W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Caspase-3 subunit p17
A
175Homo sapiensMutation(s): 0 
Gene Names: CASP3 (CPP32)
EC: 3.4.22.56
Find proteins for P42574 (Homo sapiens)
Go to Gene View: CASP3
Go to UniProtKB:  P42574
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Caspase-3 subunit p12
B
110Homo sapiensMutation(s): 0 
Gene Names: CASP3 (CPP32)
EC: 3.4.22.56
Find proteins for P42574 (Homo sapiens)
Go to Gene View: CASP3
Go to UniProtKB:  P42574
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
ACE-1MH-ASP-B3L-PHE-1U8
C
6N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Modified Residues  4 Unique
IDChainsTypeFormula2D DiagramParent
1U8
Query on 1U8
C
L-PEPTIDE LINKINGC14 H17 N O5

--

1MH
Query on 1MH
C
L-PEPTIDE LINKINGC8 H10 N2 O2

--

B3L
Query on B3L
C
L-peptide linkingC7 H15 N O2

--

ACE
Query on ACE
C
NON-POLYMERC2 H4 O

--

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.171 
  • R-Value Work: 0.153 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 67.095α = 90.00
b = 83.892β = 90.00
c = 95.863γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
HKL-2000data reduction
PHASERphasing
PDB_EXTRACTdata extraction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
U.S. National Institutes of HealthUnited States5R21AI112796
U.S. National Institutes of HealthUnited States1R01GM118382

Revision History 

  • Version 1.0: 2019-03-06
    Type: Initial release