6CKY | pdb_00006cky

Crystal structure of UcmS2

PDB DOI: https://doi.org/10.2210/pdb6CKY/pdb

Classification: ANTITOXIN
Organism(s): Streptomyces uncialis
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2018-03-01 Released: 2019-03-06
Deposition Author(s): Chang, C.Y., Chang, C., Annaval, T., Babnigg, G., Phillips Jr., G.N., Joachimiak, A., Shen, B.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free:
0.261 (Depositor), 0.268 (DCC)
R-Value Work:
0.211 (Depositor), 0.219 (DCC)
R-Value Observed:
0.214 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of UcmS2

Chang, C.Y., Chang, C., Annaval, T., Babnigg, G., Phillips Jr., G.N., Joachimiak, A., Shen, B.

To be published.

Macromolecule Content

Total Structure Weight: 35 kDa
Atom Count: 2,221
Modeled Residue Count: 268
Deposited Residue Count: 310
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glyoxalase	A, B	155	Streptomyces uncialis	Mutation(s): 0 Gene Names: ucmS2, AB852_17870
UniProt
Find proteins for A0A140E9J7 (Streptomyces uncialis) Explore A0A140E9J7 Go to UniProtKB: A0A140E9J7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A140E9J7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.261 (Depositor), 0.268 (DCC)
R-Value Work: 0.211 (Depositor), 0.219 (DCC)
R-Value Observed: 0.214 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 48.531	α = 90
b = 75.945	β = 90
c = 142.912	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
MOLREP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2019-03-06

Deposition Author(s):

Phillips Jr., G.N.

Revision History (Full details and data files)

Version 1.0: 2019-03-06
Type: Initial release
Version 1.1: 2019-12-04
Changes: Author supporting evidence
Version 1.2: 2023-10-04
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.