6CGV

Revised crystal structure of human adenovirus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.8 Å
  • R-Value Free: 0.427 
  • R-Value Work: 0.422 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Revised Crystal Structure of Human Adenovirus Reveals the Limits on Protein IX Quasi-Equivalence and on Analyzing Large Macromolecular Complexes.

Kundhavai Natchiar, S.Venkataraman, S.Mullen, T.M.Nemerow, G.R.Reddy, V.S.

(2018) J. Mol. Biol. 430: 4132-4141


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hexon protein
A, B, C, D, E, F, G, H, I, J, K, L
949Human adenovirus C serotype 5Mutation(s): 0 
Gene Names: L3
Find proteins for P04133 (Human adenovirus C serotype 5)
Go to UniProtKB:  P04133
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Penton protein
N
571Human adenovirus C serotype 5Mutation(s): 0 
Gene Names: L2
Find proteins for P12538 (Human adenovirus C serotype 5)
Go to UniProtKB:  P12538
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Pre-hexon-linking protein IIIa
M
585Human adenovirus C serotype 5Mutation(s): 0 
Find proteins for P12537 (Human adenovirus C serotype 5)
Go to UniProtKB:  P12537
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Hexon-interlacing protein
P, Q, R, S
140Human adenovirus C serotype 5Mutation(s): 0 
Gene Names: IX
Find proteins for P03281 (Human adenovirus C serotype 5)
Go to UniProtKB:  P03281
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
Pre-hexon-linking protein VIII
U, V
227Human adenovirus C serotype 5Mutation(s): 0 
Gene Names: L4
Find proteins for P24936 (Human adenovirus C serotype 5)
Go to UniProtKB:  P24936
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
Pre-protein VI
W
24Human adenovirus C serotype 5Mutation(s): 0 
Gene Names: L3
Find proteins for P24937 (Human adenovirus C serotype 5)
Go to UniProtKB:  P24937
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.8 Å
  • R-Value Free: 0.427 
  • R-Value Work: 0.422 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 854.245α = 60.38
b = 855.315β = 60.43
c = 865.907γ = 61.98
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesR01 AI070771

Revision History 

  • Version 1.0: 2018-04-25
    Type: Initial release
  • Version 1.1: 2018-09-05
    Type: Data collection, Database references
  • Version 1.2: 2018-10-24
    Type: Data collection, Database references
  • Version 1.3: 2019-02-20
    Type: Author supporting evidence, Data collection