6CD3

Crystal structure of 3-hydroxyanthranilate-3,4-dioxygenase I142A from Cupriavidus metallidurans in complex with 3-HAA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.612 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.192 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Adapting to oxygen: 3-Hydroxyanthrinilate 3,4-dioxygenase employs loop dynamics to accommodate two substrates with disparate polarities.

Yang, Y.Liu, F.Liu, A.

(2018) J. Biol. Chem. 293: 10415-10424


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
3-hydroxyanthranilate 3,4-dioxygenase
A
195Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34)Mutation(s): 1 
Gene Names: nbaC
EC: 1.13.11.6
Find proteins for Q1LCS4 (Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34))
Go to UniProtKB:  Q1LCS4
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FE2
Query on FE2

Download SDF File 
Download CCD File 
A
FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
 Ligand Interaction
3HA
Query on 3HA

Download SDF File 
Download CCD File 
A
3-HYDROXYANTHRANILIC ACID
2-AMINO-3-HYDROXYBENZOIC ACID
C7 H7 N O3
WJXSWCUQABXPFS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.612 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.192 
  • Space Group: P 65 2 2
Unit Cell:
Length (Å)Angle (°)
a = 58.410α = 90.00
b = 58.410β = 90.00
c = 230.814γ = 120.00
Software Package:
Software NamePurpose
DENZOdata reduction
HKL-2000data scaling
PDB_EXTRACTdata extraction
PHENIXphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesR01GM108988
National Institutes of Health/National Institute of Mental HealthUnited StatesR21MH10798
National Science Foundation (United States)United StatesCHE-1623856

Revision History 

  • Version 1.0: 2018-06-06
    Type: Initial release
  • Version 1.1: 2018-07-18
    Type: Data collection, Database references
  • Version 1.2: 2019-02-20
    Type: Author supporting evidence, Data collection