Crystal structure MBD3 MBD domain in complex with methylated CpG DNA
Liu, K., Tempel, W., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J.To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Find similar proteins by: Sequence  |  Structure
Entity ID: 1 | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details |
Methyl-CpG-binding domain protein 3 | A, B | 73 | Homo sapiens | Gene Names: MBD3 |
Find proteins for O95983 (Homo sapiens) Go to Gene View: MBD3 Go to UniProtKB:  O95983 |
Entity ID: 2 | ||||
---|---|---|---|---|
Molecule | Chains | Length | Organism | |
methylated CpG DNA | C,D,E,F | 12 | synthetic construct |
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
UNX Query on UNX | A, B, C, E | UNKNOWN ATOM OR ION X * | ![]() |  Ligand Interaction | |
UNK Query on UNK | F | UNKNOWN C4 H9 N O2 QWCKQJZIFLGMSD-VKHMYHEASA-N | ![]() |  Ligand Interaction |
Modified Residues  1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
5CM Query on 5CM | C, D, E, F | DNA LINKING | C10 H16 N3 O7 P | ![]() | DC |
Length (Å) | Angle (°) |
---|---|
a = 71.550 | α = 90.00 |
b = 36.640 | β = 92.77 |
c = 130.930 | γ = 90.00 |
Software Name | Purpose |
---|---|
PDB_EXTRACT | data extraction |
MOLREP | phasing |
XDS | data reduction |
PHASER | phasing |
REFMAC | refinement |
Aimless | data scaling |