6CB2

Crystal structure of Escherichia coli UppP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.254 
  • R-Value Work: 0.219 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of an intramembranal phosphatase central to bacterial cell-wall peptidoglycan biosynthesis and lipid recycling.

Workman, S.D.Worrall, L.J.Strynadka, N.C.J.

(2018) Nat Commun 9: 1159-1159


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Undecaprenyl-diphosphatase
A
293Escherichia coli O157:H7Mutation(s): 0 
Gene Names: uppP (bacA, upk)
EC: 3.6.1.27
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Phosphatidic Acid Phosphatases
Protein: 
BacA (UppP) undecaprenyl-pyrophosphate phosphatase
Find proteins for P60933 (Escherichia coli O157:H7)
Go to UniProtKB:  P60933
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
OLC
Query on OLC

Download SDF File 
Download CCD File 
A
(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
1-Oleoyl-R-glycerol
C21 H40 O4
RZRNAYUHWVFMIP-GDCKJWNLSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.254 
  • R-Value Work: 0.219 
  • Space Group: C 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 109.880α = 90.00
b = 146.080β = 90.00
c = 40.190γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
SHARPphasing
DIALSdata reduction
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canada--

Revision History 

  • Version 1.0: 2018-03-28
    Type: Initial release
  • Version 1.1: 2018-04-04
    Type: Data collection, Database references
  • Version 1.2: 2018-06-06
    Type: Data collection, Database references, Source and taxonomy