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Download EndnoteCrystal structure of a peptide deformylase from Legionella pneumophila
Edwards, T.E., Horanyi, P.S., Lorimer, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)To be published.
6CAZ
Crystal structure of a peptide deformylase from Legionella pneumophila
- DOI: 10.2210/pdb6CAZ/pdb
- Classification: HYDROLASE
- Organism(s): Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
- Expression System: Escherichia coli
- Deposited: 2018-02-01 Released: 2018-02-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.5 Å
- R-Value Free: 0.193
- R-Value Work: 0.166
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Peptide deformylase | A | 178 | Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) | Mutation(s): 0 Gene Names: def EC: 3.5.1.88 |
Find proteins for Q5ZSC4 (Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)) Go to UniProtKB: Q5ZSC4 | ||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | A | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| NI Query on NI | A | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |  | Ligand Interaction | |
| MES Query on MES | A | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID C6 H13 N O4 S SXGZJKUKBWWHRA-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.5 Å
- R-Value Free: 0.193
- R-Value Work: 0.166
- Space Group: P 21 21 21
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 38.210 | α = 90.00 |
| b = 50.900 | β = 90.00 |
| c = 105.330 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| PHASER | phasing |
Entry History
Deposition Data
- Deposited Date: 2018-02-01
- Released Date: 2018-02-14
- Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History
- Version 1.0: 2018-02-14
Type: Initial release
