6C31

Crystal structure of TetR family protein Rv0078 in complex with DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.202 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Cytokinin Signaling in Mycobacterium tuberculosis.

Samanovic, M.I.Hsu, H.C.Jones, M.B.Jones, V.McNeil, M.R.Becker, S.H.Jordan, A.T.Strnad, M.Xu, C.Jackson, M.Li, H.Darwin, K.H.

(2018) MBio 9: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
TetR family transcriptional regulator
A, B, C, D, E, F, G, H
214Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)Mutation(s): 0 
Find proteins for O53623 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
Go to UniProtKB:  O53623
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(P*AP*CP*AP*AP*GP*CP*AP*GP*AP*CP*TP*GP*CP*CP*GP*GP*TP*AP*AP*C)-3')I,K23Mycobacterium tuberculosis H37Rv
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (5'-D(*GP*TP*TP*AP*CP*CP*GP*GP*CP*AP*GP*TP*CP*TP*GP*CP*TP*TP*GP*TP*AP*AP*A)-3')J,L23Mycobacterium tuberculosis H37Rv
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.202 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 82.039α = 90.00
b = 80.040β = 90.07
c = 186.660γ = 90.00
Software Package:
Software NamePurpose
SCALAdata scaling
PHENIXrefinement
MOSFLMdata reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-01-09 
  • Released Date: 2018-07-04 
  • Deposition Author(s): Hsu, H.C., Li, H.

Funding OrganizationLocationGrant Number
NIHUnited StatesR01AI070285

Revision History 

  • Version 1.0: 2018-07-04
    Type: Initial release