6C2Y

Human GRK2 in complex with Gbetagamma subunits and CCG257142


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.74 Å
  • R-Value Free: 0.292 
  • R-Value Work: 0.244 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Utilizing a structure-based docking approach to develop potent G protein-coupled receptor kinase (GRK) 2 and 5 inhibitors.

Waldschmidt, H.V.Bouley, R.Kirchhoff, P.D.Lee, P.Tesmer, J.J.G.Larsen, S.D.

(2018) Bioorg. Med. Chem. Lett. 28: 1507-1515


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-adrenergic receptor kinase 1
A
689Homo sapiensMutation(s): 1 
Gene Names: GRK2 (ADRBK1, BARK, BARK1)
EC: 2.7.11.15
Find proteins for P25098 (Homo sapiens)
Go to Gene View: GRK2
Go to UniProtKB:  P25098
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
B
340Bos taurusMutation(s): 0 
Gene Names: GNB1
Find proteins for P62871 (Bos taurus)
Go to Gene View: GNB1
Go to UniProtKB:  P62871
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
G
77Bos taurusMutation(s): 1 
Gene Names: GNG2
Find proteins for P63212 (Bos taurus)
Go to Gene View: GNG2
Go to UniProtKB:  P63212
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EJS
Query on EJS

Download SDF File 
Download CCD File 
A
(4R,5R,6S)-4-[4-fluoro-3-({[3-(methoxymethyl)-1,2,4-oxadiazol-5-yl]methyl}carbamoyl)phenyl]-N-(2H-indazol-5-yl)-6-methyl-2-oxohexahydropyrimidine-5-carboxamide
C25 H25 F N8 O5
XBLIMSJQQFDWSD-QDWRYXNXSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.74 Å
  • R-Value Free: 0.292 
  • R-Value Work: 0.244 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 60.557α = 90.00
b = 240.453β = 90.00
c = 212.796γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
PHENIXrefinement
DIALSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Heart, Lung, and Blood InstituteUnited StatesR01 HL071818

Revision History 

  • Version 1.0: 2018-04-25
    Type: Initial release
  • Version 1.1: 2018-05-02
    Type: Data collection, Database references