Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Methyl-CpG-binding domain protein 2
A, D, G, J, M, P
79Homo sapiensGene Names: MBD2
Find proteins for Q9UBB5 (Homo sapiens)
Go to Gene View: MBD2
Go to UniProtKB:  Q9UBB5
Entity ID: 2
MoleculeChainsLengthOrganism
12-mer DNAB,E,H,K,N,Q12synthetic construct
Entity ID: 3
MoleculeChainsLengthOrganism
12-mer DNAC,F,I,L,O,R12synthetic construct
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
UNX
Query on UNX

Download SDF File 
Download CCD File 
A, D, G, J, M, P
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
5CM
Query on 5CM
B, E, H, K, N, Q
DNA LINKINGC10 H16 N3 O7 PDC
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 40.510α = 90.07
b = 40.600β = 93.11
c = 202.380γ = 119.75
Software Package:
Software NamePurpose
Aimlessdata scaling
PDB_EXTRACTdata extraction
PHASERphasing
XDSdata reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-02-14
    Type: Initial release