6C2F

MBD2 in complex with methylated DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.211 
  • R-Value Observed: 0.213 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

MBD2 in complex with methylated DNA

Liu, K.Xu, C.Tempel, W.Arrowsmith, C.H.Bountra, C.Edwards, A.M.Min, J.Structural Genomics Consortium

To be published.

Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Methyl-CpG-binding domain protein 2A, D, G, J, M, P79Homo sapiensMutation(s): 0 
Gene Names: MBD2
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UBB5 (Homo sapiens)
Explore Q9UBB5 
Go to UniProtKB:  Q9UBB5
PHAROS:  Q9UBB5
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 2
    MoleculeChainsLengthOrganismImage
    12-mer DNAB, E, H, K, N, Q12synthetic construct
    Protein Feature View
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    • Reference Sequence
    • Find similar nucleic acids by:  Sequence   |   Structure
    • Entity ID: 3
      MoleculeChainsLengthOrganismImage
      12-mer DNAC, F, I, L, O, R12synthetic construct
      Protein Feature View
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      • Reference Sequence
      Experimental Data & Validation

      Experimental Data

      • Method: X-RAY DIFFRACTION
      • Resolution: 2.65 Å
      • R-Value Free: 0.242 
      • R-Value Work: 0.211 
      • R-Value Observed: 0.213 
      • Space Group: P 1
      • Diffraction Data DOI: 10.18430/M36C2F Protein Diffraction
      Unit Cell:
      Length ( Å )Angle ( ˚ )
      a = 40.51α = 90.07
      b = 40.6β = 93.11
      c = 202.38γ = 119.75
      Software Package:
      Software NamePurpose
      PHENIXrefinement
      Aimlessdata scaling
      PDB_EXTRACTdata extraction
      XDSdata reduction
      PHASERphasing

      Structure Validation

      View Full Validation Report



      Entry History 

      Deposition Data

      Revision History  (Full details and data files)

      • Version 1.0: 2018-02-14
        Type: Initial release