6C1U

MBD2 in complex with a deoxy-oligonucleotide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.272 
  • R-Value Work: 0.232 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

MBD2 in complex with a deoxy-oligonucleotide

Lei, M.Tempel, W.Arrowsmith, C.H.Bountra, C.Edwards, A.M.Min, J.Structural Genomics Consortium

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Methyl-CpG-binding domain protein 2
A, B, E, F
79Homo sapiensGene Names: MBD2
Find proteins for Q9UBB5 (Homo sapiens)
Go to Gene View: MBD2
Go to UniProtKB:  Q9UBB5
Entity ID: 2
MoleculeChainsLengthOrganism
12-mer DNAC,G12synthetic construct
Entity ID: 3
MoleculeChainsLengthOrganism
12-mer DNAD,H12synthetic construct
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
UNX
Query on UNX

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
5CM
Query on 5CM
D, H
DNA LINKINGC10 H16 N3 O7 PDC
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 36.912α = 84.48
b = 40.015β = 85.91
c = 105.890γ = 62.77
Software Package:
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
XDSdata reduction
PDB_EXTRACTdata extraction
REFMACphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-02-14
    Type: Initial release