6BYY

MEF2 CHIMERA/DNA Complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.213 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The cancer mutation D83V induces an a-helix to b-strand conformation switch in MEF2B

Lei, X.Chen, L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
MEF2 CHIMERA
A, B, C, D
95Homo sapiensGene Names: MEF2A (MEF2), MEF2B (XMEF2)
Find proteins for Q02078 (Homo sapiens)
Go to Gene View: MEF2A
Go to UniProtKB:  Q02078
Find proteins for Q02080 (Homo sapiens)
Go to Gene View: MEF2B
Go to UniProtKB:  Q02080
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(P*AP*AP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*GP*A)-3')K,E14Homo sapiens
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (5'-D(P*TP*TP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*TP*T)-3')L,F15Homo sapiens
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
1PG
Query on 1PG

Download SDF File 
Download CCD File 
A
2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL
C11 H24 O6
SLNYBUIEAMRFSZ-UHFFFAOYSA-N
 Ligand Interaction
TCE
Query on TCE

Download SDF File 
Download CCD File 
F
3,3',3''-phosphanetriyltripropanoic acid
3-[bis(2-carboxyethyl)phosphanyl]propanoic acid
C9 H15 O6 P
PZBFGYYEXUXCOF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.213 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 77.350α = 90.00
b = 77.760β = 90.00
c = 106.310γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2017-12-21 
  • Released Date: 2018-01-31 
  • Deposition Author(s): Lei, X., Chen, L.

Funding OrganizationCountryGrant Number
National Institutes of Health/National Human Genome Research InstituteUnited States--

Revision History 

  • Version 1.0: 2018-01-31
    Type: Initial release