6BVE

Triosephosphate isomerase of Synechocystis in complex with 2-Phosphoglycolic acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.154 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural Basis for the Limited Response to Oxidative and Thiol-Conjugating Agents by Triosephosphate Isomerase From the Photosynthetic BacteriaSynechocystis.

Castro-Torres, E.Jimenez-Sandoval, P.Fernandez-de Gortari, E.Lopez-Castillo, M.Baruch-Torres, N.Lopez-Hidalgo, M.Peralta-Castro, A.Diaz-Quezada, C.Sotelo-Mundo, R.R.Benitez-Cardoza, C.G.Espinoza-Fonseca, L.M.Ochoa-Leyva, A.Brieba, L.G.

(2018) Front Mol Biosci 5: 103-103


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Triosephosphate isomerase
A, B
245Synechocystis sp. (strain PCC 6803 / Kazusa)Mutation(s): 0 
Gene Names: tpiA (tpi)
EC: 5.3.1.1
Find proteins for Q59994 (Synechocystis sp. (strain PCC 6803 / Kazusa))
Go to UniProtKB:  Q59994
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A, B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
PGA
Query on PGA

Download SDF File 
Download CCD File 
A, B
2-PHOSPHOGLYCOLIC ACID
C2 H5 O6 P
ASCFNMCAHFUBCO-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.154 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 72.880α = 90.00
b = 73.099β = 90.00
c = 85.175γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
d*TREKdata reduction
Aimlessdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
CONACyTMexicoFronteras de la Ciencia 13

Revision History 

  • Version 1.0: 2018-12-19
    Type: Initial release
  • Version 1.1: 2018-12-26
    Type: Data collection, Database references