6BUH

Crystal structure of a membrane protein, crystal form II


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.299 
  • R-Value Work: 0.276 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of a membrane-bound O-acyltransferase.

Ma, D.Wang, Z.Merrikh, C.N.Lang, K.S.Lu, P.Li, X.Merrikh, H.Rao, Z.Xu, W.

(2018) Nature 562: 286-290


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
D-alanyl carrier protein
A, B, E, G
82Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)Mutation(s): 0 
Gene Names: dltC
Find proteins for Q5M4V3 (Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311))
Go to UniProtKB:  Q5M4V3
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
D-alanyl transfer protein DltB
C, D, F, H
425Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)Mutation(s): 0 
Gene Names: dltB
Find proteins for Q5M4V4 (Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311))
Go to UniProtKB:  Q5M4V4
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
SEP
Query on SEP
A, B, E, G
L-PEPTIDE LINKINGC3 H8 N O6 PSER
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.299 
  • R-Value Work: 0.276 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 108.677α = 90.00
b = 124.581β = 96.99
c = 126.712γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2017-12-10 
  • Released Date: 2018-10-10 
  • Deposition Author(s): Ma, D., Wang, Z., Xu, W.

Revision History 

  • Version 1.0: 2018-10-10
    Type: Initial release
  • Version 1.1: 2018-10-17
    Type: Data collection, Database references, Structure summary
  • Version 1.2: 2018-10-24
    Type: Data collection, Database references