6BTJ | pdb_00006btj

Crystal structure of pan-H7, anti-hemagglutinin monoclonal antibody H7.5 (Fab fragment)

PDB DOI: https://doi.org/10.2210/pdb6BTJ/pdb

Classification: ANTIVIRAL PROTEIN
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2017-12-06 Released: 2018-12-19
Deposition Author(s): Shanshan, L., Ian, A.W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.201 (Depositor), 0.214 (DCC)
R-Value Work:
0.200 (Depositor), 0.207 (DCC)
R-Value Observed:
0.200 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 2.1 of the entry. See complete history.

Literature

Crystal structure of pan-H7, anti-hemagglutinin monoclonal antibody H7.5 (Fab fragment)

Andrew, B.W., Ian, A.W., James, E.C., Hannah, T., Shanshan, L., Jesper, P., Sandhya, B.

To be published.

Macromolecule Content

Total Structure Weight: 97.1 kDa
Atom Count: 7,300
Modeled Residue Count: 860
Deposited Residue Count: 894
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Heavy chain of H7.5 Fab	A, C [auth H]	233	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Light chain of H7.5 Fab	B, D [auth L]	214	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.201 (Depositor), 0.214 (DCC)
R-Value Work: 0.200 (Depositor), 0.207 (DCC)
R-Value Observed: 0.200 (Depositor)

Space Group: P 2 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 65.51	α = 90
b = 99.038	β = 90
c = 208.565	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
SCALA	data scaling
PARROT	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2018-12-19

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-12-19
Type: Initial release
Version 2.0: 2023-02-22
Changes: Advisory, Atomic model, Data collection, Database references, Non-polymer description, Polymer sequence, Source and taxonomy, Structure summary
Version 2.1: 2024-11-06
Changes: Data collection, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.