6BSM

BMP1 complexed with a reverse hydroxamate - compound 4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.33 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.192 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Reverse Hydroxamate Inhibitors of Bone Morphogenetic Protein 1.

Kallander, L.S.Washburn, D.Hilfiker, M.A.Eidam, H.S.Lawhorn, B.G.Prendergast, J.Fox, R.Dowdell, S.Manns, S.Hoang, T.Zhao, S.Ye, G.Hammond, M.Holt, D.A.Roethke, T.Hong, X.Reid, R.A.Gampe, R.Zhang, H.Diaz, E.Rendina, A.R.Quinn, A.M.Willette, B.

(2018) ACS Med Chem Lett 9: 736-740


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Bone morphogenetic protein 1
A
201Homo sapiensMutation(s): 0 
Gene Names: BMP1 (PCOLC)
EC: 3.4.24.19
Find proteins for P13497 (Homo sapiens)
Go to Gene View: BMP1
Go to UniProtKB:  P13497
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
E7D
Query on E7D

Download SDF File 
Download CCD File 
A
N-({[(2R)-2-{[hydroxy(hydroxymethyl)amino]methyl}heptanoyl]amino}methyl)-7-methoxy-1-benzofuran-2-carboxamide
C20 H29 N3 O6
SHHWEKDWPKWOKJ-OAHLLOKOSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
ACE
Query on ACE
A
NON-POLYMERC2 H4 O

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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.33 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.192 
  • Space Group: P 21 3
Unit Cell:
Length (Å)Angle (°)
a = 101.789α = 90.00
b = 101.789β = 90.00
c = 101.789γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
REFMACphasing
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-08-08
    Type: Initial release