6BSF

Human GR (418-507) in complex with monomeric DNA binding site


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.206 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

General and sequence-specific roles for DNA in glucocorticoid receptor DNA-binding stoichiometry

Pufall, M.A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Glucocorticoid receptor
B, A
91Saguinus oedipusMutation(s): 0 
Gene Names: NR3C1 (GRL)
Find proteins for P79269 (Saguinus oedipus)
Go to Gene View: NR3C1
Go to UniProtKB:  P79269
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(P*TP*GP*CP*AP*AP*AP*TP*GP*TP*AP*CP*TP*AP*GP*CP*T)-3')C16synthetic construct
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (5'-D(P*AP*AP*GP*CP*TP*AP*GP*TP*AP*CP*AP*TP*TP*TP*GP*C)-3')D16synthetic construct
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.206 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 38.345α = 90.00
b = 87.907β = 90.00
c = 103.702γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
PHASERphasing
PHENIXrefinement
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2017-12-02 
  • Released Date: 2018-12-05 
  • Deposition Author(s): Pufall, M.A.

Funding OrganizationLocationGrant Number
National Science Foundation (United States)United StatesCAREER grant 1552862
National Institutes of Health/National Cancer InstituteUnited StatesK99/R00 CA149088

Revision History 

  • Version 1.0: 2018-12-05
    Type: Initial release