6BRI

RHCC with unreduced and reduced Mercury complexes


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.266 Å
  • R-Value Free: 0.300 
  • R-Value Work: 0.282 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Reductive power of the archaea right-handed coiled coil nanotube (RHCC-NT) and incorporation of mercury clusters inside protein cages.

McDougall, M.McEleney, K.Francisco, O.Trieu, B.Ogbomo, E.K.Tomy, G.Stetefeld, J.

(2018) J. Struct. Biol. 203: 281-287


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Right Handed Coiled Coil
A, B, C, D
52Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / JCM 9404 / F1)Mutation(s): 0 
Find proteins for A3DN96 (Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / JCM 9404 / F1))
Go to UniProtKB:  A3DN96
Small Molecules
Ligands 8 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K
Query on K

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Download CCD File 
B, C, D
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
NA
Query on NA

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A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
IOD
Query on IOD

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Download CCD File 
A, B, D
IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
 Ligand Interaction
SO4
Query on SO4

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B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

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C, D
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
HGI
Query on HGI

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Download CCD File 
D
MERCURY (II) IODIDE
MERCURY DIIODIDE
Hg I2
YFDLHELOZYVNJE-UHFFFAOYSA-L
 Ligand Interaction
HGN
Query on HGN

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Download CCD File 
A, D
mercuriomercury
Hg2
KYKQHSMYWLWROM-UHFFFAOYSA-N
 Ligand Interaction
HG
Query on HG

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Download CCD File 
A, B, D
MERCURY (II) ION
Hg
BQPIGGFYSBELGY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.266 Å
  • R-Value Free: 0.300 
  • R-Value Work: 0.282 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 108.823α = 90.00
b = 108.823β = 90.00
c = 70.388γ = 120.00
Software Package:
Software NamePurpose
SCALAdata scaling
Cootmodel building
PHENIXrefinement
PHASERphasing
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Natural Sciences and Engineering Research Council (Canada)CanadaRGPIN-342077-2012
Natural Sciences and Engineering Research Council (Canada)CanadaRGPIN-004954-2017
Natural Sciences and Engineering Research Council (Canada)CanadaSTGP 479210-2015

Revision History 

  • Version 1.0: 2018-02-07
    Type: Initial release
  • Version 1.1: 2018-02-14
    Type: Author supporting evidence
  • Version 1.2: 2018-06-20
    Type: Data collection, Database references
  • Version 1.3: 2018-08-22
    Type: Data collection, Database references