6BRA

HIV-1 protease (D25N, inactive) in complex with phage display optimized substrate SGIFLETS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.111 Å
  • R-Value Free: 0.184 
  • R-Value Work: 0.171 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

A substrate selected by phage display exhibits enhanced side-chain hydrogen bonding to HIV-1 protease.

Windsor, I.W.Raines, R.T.

(2018) Acta Crystallogr D Struct Biol 74: 690-694


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protease
A, B
99Human immunodeficiency virus 1Mutation(s): 6 
Gene Names: pol
Find proteins for Q5RZ08 (Human immunodeficiency virus 1)
Go to UniProtKB:  Q5RZ08
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Phage display-optimized HIV-1 protease substrate
S
8N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.111 Å
  • R-Value Free: 0.184 
  • R-Value Work: 0.171 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 58.033α = 90.00
b = 85.767β = 90.00
c = 46.130γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
PHENIXrefinement
SCALEPACKdata scaling
HKL-2000data reduction
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
NIHUnited StatesP41 GM103399
NIHUnited StatesR01 GM044783

Revision History 

  • Version 1.0: 2018-07-18
    Type: Initial release