6BQN | pdb_00006bqn

Cryo-EM structure of ENaC


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 6BQN

This is version 1.4 of the entry. See complete history

Literature

Structure of the human epithelial sodium channel by cryo-electron microscopy.

Noreng, S.Bharadwaj, A.Posert, R.Yoshioka, C.Baconguis, I.

(2018) Elife 7

  • DOI: https://doi.org/10.7554/eLife.39340
  • Primary Citation Related Structures: 
    6BQN

  • PubMed Abstract: 

    The epithelial sodium channel (ENaC), a member of the ENaC/DEG superfamily, regulates Na + and water homeostasis. ENaCs assemble as heterotrimeric channels that harbor protease-sensitive domains critical for gating the channel. Here, we present the structure of human ENaC in the uncleaved state determined by single-particle cryo-electron microscopy. The ion channel is composed of a large extracellular domain and a narrow transmembrane domain. The structure reveals that ENaC assembles with a 1:1:1 stoichiometry of α:β:γ subunits arranged in a counter-clockwise manner. The shape of each subunit is reminiscent of a hand with key gating domains of a 'finger' and a 'thumb.' Wedged between these domains is the elusive protease-sensitive inhibitory domain poised to regulate conformational changes of the 'finger' and 'thumb'; thus, the structure provides the first view of the architecture of inhibition of ENaC.


  • Organizational Affiliation
    • Department of Biochemistry & Molecular Biology, Oregon Health and Science University, Portland, United States.

Macromolecule Content 

  • Total Structure Weight: 203.62 kDa 
  • Atom Count: 12,737 
  • Modeled Residue Count: 1,815 
  • Deposited Residue Count: 1,941 
  • Unique protein chains: 7

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
SCNN1A489Homo sapiensMutation(s): 0 
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P37088 (Homo sapiens)
Explore P37088 
Go to UniProtKB:  P37088
PHAROS:  P37088
GTEx:  ENSG00000111319 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP37088
Sequence Annotations
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
SCNN1B495Homo sapiensMutation(s): 0 
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P51168 (Homo sapiens)
Explore P51168 
Go to UniProtKB:  P51168
PHAROS:  P51168
GTEx:  ENSG00000168447 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP51168
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
EGFP-SCNN1G chimera503Homo sapiensMutation(s): 0 
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P51170 (Homo sapiens)
Explore P51170 
Go to UniProtKB:  P51170
PHAROS:  P51170
GTEx:  ENSG00000166828 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP51170
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
7B1 fab106Mus musculusMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
7B1 fab121Mus musculusMutation(s): 0 
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
10D4 fab115Mus musculusMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
10D4 fab112Mus musculusMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/Office of the DirectorUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2018-10-10
    Type: Initial release
  • Version 1.1: 2018-10-24
    Changes: Data collection, Database references, Structure summary
  • Version 1.2: 2019-12-18
    Changes: Author supporting evidence, Other
  • Version 1.3: 2024-10-30
    Changes: Data collection, Database references, Structure summary
  • Version 1.4: 2025-05-14
    Changes: Data collection