6BQG

Crystal structure of 5-HT2C in complex with ergotamine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.291 
  • R-Value Work: 0.261 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

5-HT2C Receptor Structures Reveal the Structural Basis of GPCR Polypharmacology.

Peng, Y.McCorvy, J.D.Harpsoe, K.Lansu, K.Yuan, S.Popov, P.Qu, L.Pu, M.Che, T.Nikolajsen, L.F.Huang, X.P.Wu, Y.Shen, L.Bjorn-Yoshimoto, W.E.Ding, K.Wacker, D.Han, G.W.Cheng, J.Katritch, V.Jensen, A.A.Hanson, M.A.Zhao, S.Gloriam, D.E.Roth, B.L.Stevens, R.C.Liu, Z.J.

(2018) Cell 172: 719-730.e14


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
5-hydroxytryptamine receptor 2C,Soluble cytochrome b562
A
452Escherichia coliHomo sapiens
This entity is chimeric
Mutation(s): 4 
Gene Names: cybC, HTR2C (HTR1C)
Find proteins for P0ABE7 (Escherichia coli)
Go to UniProtKB:  P0ABE7
Find proteins for P28335 (Homo sapiens)
Go to Gene View: HTR2C
Go to UniProtKB:  P28335
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
OLC
Query on OLC

Download SDF File 
Download CCD File 
A
(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
1-Oleoyl-R-glycerol
C21 H40 O4
RZRNAYUHWVFMIP-GDCKJWNLSA-N
 Ligand Interaction
ERM
Query on ERM

Download SDF File 
Download CCD File 
A
Ergotamine
C33 H35 N5 O5
XCGSFFUVFURLIX-VFGNJEKYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.291 
  • R-Value Work: 0.261 
  • Space Group: P 2 21 2
Unit Cell:
Length (Å)Angle (°)
a = 49.840α = 90.00
b = 94.580β = 90.00
c = 145.160γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2018-02-14
    Type: Initial release
  • Version 1.1: 2018-02-21
    Type: Database references