6BOK

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.55 Å

wwPDB Validation 3D Report Full Report


This is version 2.1 of the entry. See complete history


Literature

Conformational Control of Translation Termination on the 70S Ribosome.

Svidritskiy, E.Korostelev, A.A.

(2018) Structure 26: 821

  • DOI: 10.1016/j.str.2018.04.001
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • Translation termination ensures proper lengths of cellular proteins. During termination, release factor (RF) recognizes a stop codon and catalyzes peptide release. Conformational changes in RF are thought to underlie accurate translation termination. ...

    Translation termination ensures proper lengths of cellular proteins. During termination, release factor (RF) recognizes a stop codon and catalyzes peptide release. Conformational changes in RF are thought to underlie accurate translation termination. However, structural studies of ribosome termination complexes have only captured RFs in a conformation that is consistent with the catalytically active state. Here, we employ a hyper-accurate RF1 variant to obtain crystal structures of 70S termination complexes that suggest a structural pathway for RF1 activation. We trapped RF1 conformations with the catalytic domain outside of the peptidyl-transferase center, while the codon-recognition domain binds the stop codon. Stop-codon recognition induces 30S decoding-center rearrangements that precede accommodation of the catalytic domain. The separation of codon recognition from the opening of the catalytic domain suggests how rearrangements in RF1 and in the ribosomal decoding center coordinate stop-codon recognition with peptide release, ensuring accurate translation termination.


    Organizational Affiliation

    RNA Therapeutics Institute, University of Massachusetts Medical School, 368 Plantation St., Worcester, MA 01605, USA. Electronic address: andrei.korostelev@umassmed.edu.



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L2E, HB275Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplBTT_C1325
Find proteins for Q72I07 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72I07 
Go to UniProtKB:  Q72I07
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L3F, IB206Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplCTT_C1328
Find proteins for Q72I04 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72I04 
Go to UniProtKB:  Q72I04
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L4G, JB205Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplDTT_C1327
Find proteins for Q72I05 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72I05 
Go to UniProtKB:  Q72I05
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L5H, KB182Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplETT_C1316
Find proteins for Q72I16 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72I16 
Go to UniProtKB:  Q72I16
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L9J, MB148Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplITT_C1743
Find proteins for Q72GV5 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72GV5 
Go to UniProtKB:  Q72GV5
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L13K, NB140Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplMTT_C1101
Find proteins for Q72IN1 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72IN1 
Go to UniProtKB:  Q72IN1
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L14L, OB122Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplNTT_C1318
Find proteins for Q72I14 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72I14 
Go to UniProtKB:  Q72I14
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L15M, PB150Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplOTT_C1309
Find proteins for Q72I23 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72I23 
Go to UniProtKB:  Q72I23
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L16N, QB141Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplPTT_C1321
Find proteins for Q72I11 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72I11 
Go to UniProtKB:  Q72I11
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L17O, RB118Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplQTT_C1299
Find proteins for Q72I33 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72I33 
Go to UniProtKB:  Q72I33
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L18P, SB112Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplRTT_C1312
Find proteins for Q72I20 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72I20 
Go to UniProtKB:  Q72I20
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 17
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L19Q, TB146Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplSTT_C0669
Find proteins for Q72JU9 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72JU9 
Go to UniProtKB:  Q72JU9
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 18
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L20R, UB118Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplTTT_C0185
Find proteins for Q72L76 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72L76 
Go to UniProtKB:  Q72L76
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 19
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L21S, VB101Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplUTT_C1424
Find proteins for Q72HR2 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72HR2 
Go to UniProtKB:  Q72HR2
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 20
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L22T, WB113Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplVTT_C1323
Find proteins for Q72I09 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72I09 
Go to UniProtKB:  Q72I09
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 21
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L23U, XB96Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplWTT_C1326
Find proteins for Q72I06 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72I06 
Go to UniProtKB:  Q72I06
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 22
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L24V, YB110Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplXTT_C1317
Find proteins for Q72I15 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72I15 
Go to UniProtKB:  Q72I15
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 23
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L25W, ZB206Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplYctcTT_C1225
Find proteins for Q72IA7 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72IA7 
Go to UniProtKB:  Q72IA7
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 24
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L27AC, X85Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmATT_C1423
Find proteins for Q72HR3 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72HR3 
Go to UniProtKB:  Q72HR3
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 25
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L28BC, Y98Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmBTT_C1964
Find proteins for Q72G84 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72G84 
Go to UniProtKB:  Q72G84
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 26
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L29CC, Z72Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmCTT_C1320
Find proteins for Q72I12 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72I12 
Go to UniProtKB:  Q72I12
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 27
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L30AA, DC60Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmDTT_C1310
Find proteins for Q72I22 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72I22 
Go to UniProtKB:  Q72I22
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 28
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L31BA, EC71Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmETT_C0708
Find proteins for Q72JR0 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72JR0 
Go to UniProtKB:  Q72JR0
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 29
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L32CA, FC60Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmFrpl32TT_C0050
Find proteins for P62652 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore P62652 
Go to UniProtKB:  P62652
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 30
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L33DA, GC54Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmGTT_C1735
Find proteins for Q72GW3 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72GW3 
Go to UniProtKB:  Q72GW3
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 31
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L34EA, HC49Thermus thermophilus HB27Mutation(s): 0 
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 32
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L35FA, IC65Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmITT_C0184
Find proteins for Q72L77 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72L77 
Go to UniProtKB:  Q72L77
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 33
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L36GA, JC37Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmJTT_C1304
Find proteins for Q72I28 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72I28 
Go to UniProtKB:  Q72I28
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 35
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S2JA, MC256Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsBrps2TT_C0509
Find proteins for P62662 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore P62662 
Go to UniProtKB:  P62662
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 36
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S3KA, NC239Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsCrps3TT_C1322
Find proteins for P62663 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore P62663 
Go to UniProtKB:  P62663
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 37
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S4LA, OC209Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsDrps4TT_C1301
Find proteins for P62664 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore P62664 
Go to UniProtKB:  P62664
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 38
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S5MA, PC162Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsErps5TT_C1311
Find proteins for P62665 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore P62665 
Go to UniProtKB:  P62665
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 39
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S6NA, QC101Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsFrps6TT_C1740
Find proteins for P62666 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore P62666 
Go to UniProtKB:  P62666
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 41
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S8PA, SC138Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsHrps8TT_C1314
Find proteins for P62668 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore P62668 
Go to UniProtKB:  P62668
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 42
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S9QA, TC128Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsIrps9TT_C1100
Find proteins for P62669 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore P62669 
Go to UniProtKB:  P62669
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 43
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S10RA, UC105Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsJrps10TT_C1329
Find proteins for P62653 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore P62653 
Go to UniProtKB:  P62653
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 44
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S11SA, VC129Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsKrps11TT_C1302
Find proteins for P62654 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore P62654 
Go to UniProtKB:  P62654
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 45
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S12TA, WC132Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsLrps12TT_C1333
Find proteins for P61941 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore P61941 
Go to UniProtKB:  P61941
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 46
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S13UA, XC126Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsMrps13TT_C1303
Find proteins for P62655 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore P62655 
Go to UniProtKB:  P62655
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 47
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S14 type ZVA, YC61Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsZrps14rpsNTT_C1315
Find proteins for P62656 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore P62656 
Go to UniProtKB:  P62656
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 48
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S15WA, ZC89Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsOrps15TT_C0773
Find proteins for P62657 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore P62657 
Go to UniProtKB:  P62657
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 49
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S16AD, XA88Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsPrps16TT_C0673
Find proteins for P62238 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore P62238 
Go to UniProtKB:  P62238
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 50
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S17BD, YA105Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsQrps17TT_C1319
Find proteins for P62658 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore P62658 
Go to UniProtKB:  P62658
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 51
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S18CD, ZA88Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsRrps18TT_C1742
Find proteins for P62659 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore P62659 
Go to UniProtKB:  P62659
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 52
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S19AB, DD93Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsSrps19TT_C1324
Find proteins for P62660 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore P62660 
Go to UniProtKB:  P62660
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 53
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S20BB, ED106Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsTrps20TT_C1031
Find proteins for P62661 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore P62661 
Go to UniProtKB:  P62661
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 54
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein ThxCB, FD27Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsUTT_C1030
Find proteins for P62613 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore P62613 
Go to UniProtKB:  P62613
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 55
MoleculeChainsSequence LengthOrganismDetails
Peptide chain release factor 1GD, HD365Escherichia coliMutation(s): 0 
Gene Names: prfA
Find proteins for B7MKB3 (Escherichia coli O45:K1 (strain S88 / ExPEC))
Explore B7MKB3 
Go to UniProtKB:  B7MKB3
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 40
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S7OA, RC156Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsGrps7TT_C1332
Find proteins for P62667 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore P62667 
Go to UniProtKB:  P62667
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L6I, LB180Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplFTT_C1313
Find proteins for Q72I19 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Explore Q72I19 
Go to UniProtKB:  Q72I19
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar nucleic acids by: Sequence   |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
16S ribosomal RNAA, DB1507Thermus thermophilus HB27

Find similar nucleic acids by: Sequence   |  Structure

Entity ID: 2
MoleculeChainsLengthOrganism
23S ribosomal RNAB, EB2880Thermus thermophilus HB27

Find similar nucleic acids by: Sequence   |  Structure

Entity ID: 3
MoleculeChainsLengthOrganism
5S ribosomal RNAC, FB120Thermus thermophilus HB27

Find similar nucleic acids by: Sequence   |  Structure

Entity ID: 4
MoleculeChainsLengthOrganism
16S ribosomal RNAD, GB, IA, LC77Thermus thermophilus HB27

Find similar nucleic acids by: Sequence   |  Structure

Entity ID: 34
MoleculeChainsLengthOrganism
mRNAHA, KC27synthetic construct
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download CCD File 
BA, CA, DA, EC, FC, GA, GC, JC, V, YB
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download CCD File 
A, AB, AC, AD, B, BB, BC, BD, C, CA, CD, D, DB, DC, E, EA, EB, ED, F, FA, FB, FC, G, GB, GD, H, HA, HB, HC, HD, I, IA, IB, IC, J, JA, JB, JC, K, KA, KB, KC, L, LA, LB, LC, M, MA, MB, MC, N, NA, NB, O, OA, OB, P, PA, PB, PC, Q, QB, QC, R, RA, RB, RC, S, SA, SB, SC, T, TA, TB, TC, U, UC, V, VA, VB, W, WA, WB, WC, XB, XC, Y, YA, YB, YC, Z, ZA, ZB, ZC
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
0TD
Query on 0TD
TA,WCL-PEPTIDE LINKINGC5 H9 N O4 SASP
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.55 Å
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 210.82α = 90
b = 450.45β = 90
c = 615.17γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM107465
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)United StatesDK047757

Revision History 

  • Version 1.0: 2018-05-23
    Type: Initial release
  • Version 1.1: 2018-06-20
    Changes: Data collection, Database references
  • Version 2.0: 2019-02-20
    Changes: Advisory, Atomic model, Author supporting evidence, Data collection, Derived calculations
  • Version 2.1: 2019-12-25
    Changes: Author supporting evidence