6BOE

TBK1 in complex with amide-coupled tetrazole analog of amlexanox


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.598 Å
  • R-Value Free: 0.291 
  • R-Value Work: 0.241 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Carboxylic Acid Derivatives of Amlexanox Display Enhanced Potency toward TBK1 and IKKepsilonand Reveal Mechanisms for Selective Inhibition.

Beyett, T.S.Gan, X.Reilly, S.M.Chang, L.Gomez, A.V.Saltiel, A.R.Showalter, H.D.Tesmer, J.J.G.

(2018) Mol. Pharmacol. 94: 1210-1219


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Serine/threonine-protein kinase TBK1
A
660Homo sapiensMutation(s): 0 
Gene Names: TBK1 (NAK)
EC: 2.7.11.1
Find proteins for Q9UHD2 (Homo sapiens)
Go to Gene View: TBK1
Go to UniProtKB:  Q9UHD2
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
E0S
Query on E0S

Download SDF File 
Download CCD File 
A
2-amino-5-oxo-7-(propan-2-yl)-N-(1H-tetrazol-5-yl)-5H-[1]benzopyrano[2,3-b]pyridine-3-carboxamide
C17 H15 N7 O3
JDIHMNISRGRMDY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.598 Å
  • R-Value Free: 0.291 
  • R-Value Work: 0.241 
  • Space Group: P 32 2 1
Unit Cell:
Length (Å)Angle (°)
a = 134.483α = 90.00
b = 134.483β = 90.00
c = 85.499γ = 120.00
Software Package:
Software NamePurpose
XDSdata reduction
PHENIXrefinement
Cootmodel building
XSCALEdata scaling
PHASERphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney DiseaseUnited StatesR01 DK100319

Revision History 

  • Version 1.0: 2018-09-26
    Type: Initial release
  • Version 1.1: 2019-02-20
    Type: Author supporting evidence, Data collection