6BNG

Structure of 2-dehydro-3-deoxyphosphooctonate aldolase from Acinetobacter baumannii


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.180 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of 2-dehydro-3-deoxyphosphooctonate aldolase from Acinetobacter baumannii

Abendroth, J.Delker, S.L.Lorimer, D.D.Edwards, T.E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
2-dehydro-3-deoxyphosphooctonate aldolase
A, B
289Acinetobacter baumannii (strain AB307-0294)Mutation(s): 0 
Gene Names: kdsA
EC: 2.5.1.55
Find proteins for B7H226 (Acinetobacter baumannii (strain AB307-0294))
Go to UniProtKB:  B7H226
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.180 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 77.690α = 90.00
b = 83.930β = 90.00
c = 87.700γ = 90.00
Software Package:
Software NamePurpose
Cootmodel building
PHENIXrefinement
PDB_EXTRACTdata extraction
MoRDaphasing
XSCALEdata scaling
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-12-20
    Type: Initial release