6BMG

Structure of Recombinant Dwarf Sperm Whale Myoglobin (Oxy)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.88 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.154 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of Recombinant Dwarf Sperm Whale Myoglobin (Oxy)

Samuel, P.P.Miller, M.D.Xu, W.Alvarado, S.Phillips Jr., G.N.Olson, J.S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Myoglobin
A, B
154Kogia simaMutation(s): 0 
Gene Names: MB
Find proteins for P02184 (Kogia sima)
Go to Gene View: MB
Go to UniProtKB:  P02184
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
OXY
Query on OXY

Download SDF File 
Download CCD File 
A, B
OXYGEN MOLECULE
O2
MYMOFIZGZYHOMD-UHFFFAOYSA-N
 Ligand Interaction
ACT
Query on ACT

Download SDF File 
Download CCD File 
A, B
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
HEM
Query on HEM

Download SDF File 
Download CCD File 
A, B
PROTOPORPHYRIN IX CONTAINING FE
HEME
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
CD
Query on CD

Download SDF File 
Download CCD File 
A, B
CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.88 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.154 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 85.995α = 90.00
b = 85.995β = 90.00
c = 109.010γ = 90.00
Software Package:
Software NamePurpose
XDSdata scaling
PHASERphasing
PDB_EXTRACTdata extraction
XDSdata reduction
Aimlessdata scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
The Robert A. Welch FoundationUnited StatesC-0612
National Institutes of Health/National Institute of General Medical SciencesUnited StatesR01-GM115261

Revision History 

  • Version 1.0: 2017-11-29
    Type: Initial release