6BIE

MISREADING CHAPERONE-SUBSTRATE COMPLEXES FROM RANDOM NOISE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.175 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Re-refinement Note

This entry reflects an alternative modeling of the original data in: 

  • 5IOG - determined by Horowitz, S., Koldewey, P., Martin, R., Bardwell, J.C.A.  

Literature

Misreading chaperone-substrate complexes from random noise.

Wang, J.

(2018) Nat. Struct. Mol. Biol. 25: 989-990


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Periplasmic chaperone Spy
A, B
97Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: spy
Find proteins for P77754 (Escherichia coli (strain K12))
Go to UniProtKB:  P77754
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
IMD
Query on IMD

Download SDF File 
Download CCD File 
A
IMIDAZOLE
C3 H5 N2
RAXXELZNTBOGNW-UHFFFAOYSA-O
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.175 
  • Space Group: P 41 2 2
Unit Cell:
Length (Å)Angle (°)
a = 42.960α = 90.00
b = 42.960β = 90.00
c = 258.169γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
PHENIXphasing
iMOSFLMdata reduction
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2017-11-01 
  • Released Date: 2018-10-17 
  • Deposition Author(s): WANG, J.

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesP01 GM022778

Revision History 

  • Version 1.0: 2018-10-17
    Type: Initial release
  • Version 1.1: 2018-10-24
    Type: Data collection, Database references
  • Version 1.2: 2018-11-14
    Type: Data collection, Database references
  • Version 1.3: 2019-02-20
    Type: Author supporting evidence, Data collection