6BI9

Crystal Structure of Purine Nucleoside Phosphorylase Isoform 2 from Schistosoma mansoni in complex with 1,2,5-trimethyl-1H-pyrrole-3-carboxylic acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.191 
  • R-Value Work: 0.170 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal Structure of Purine Nucleoside Phosphorylase Isoform 2 from Schistosoma mansoni in complex with 1,2,5-trimethyl-1H-pyrrole-3-carboxylic acid

Faheem, M.Neto, J.B.Collins, P.Pearce, N.M.Valadares, N.F.Bird, L.Pereira, H.M.Delft, F.V.Barbosa, J.A.R.G.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Purine nucleoside phosphorylase
A
287Schistosoma mansoniMutation(s): 0 
EC: 2.4.2.1
Find proteins for A0A0U3AGT1 (Schistosoma mansoni)
Go to UniProtKB:  A0A0U3AGT1
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
DS7
Query on DS7

Download SDF File 
Download CCD File 
A
1,2,5-trimethyl-1H-pyrrole-3-carboxylic acid
C8 H11 N O2
JTEBLTWGSAXWEE-UHFFFAOYSA-N
 Ligand Interaction
DMS
Query on DMS

Download SDF File 
Download CCD File 
A
DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
CME
Query on CME
A
L-PEPTIDE LINKINGC5 H11 N O3 S2CYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.191 
  • R-Value Work: 0.170 
  • Space Group: P 21 3
Unit Cell:
Length (Å)Angle (°)
a = 100.250α = 90.00
b = 100.250β = 90.00
c = 100.250γ = 90.00
Software Package:
Software NamePurpose
XDSdata scaling
PHENIXphasing
xia2data reduction
Cootmodel building
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-11-07
    Type: Initial release