6BHS

HIV-1 CA hexamer in complex with IP6, hexagonal crystal form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.984 Å
  • R-Value Free: 0.284 
  • R-Value Work: 0.236 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Inositol phosphates are assembly co-factors for HIV-1.

Dick, R.A.Zadrozny, K.K.Xu, C.Schur, F.K.M.Lyddon, T.D.Ricana, C.L.Wagner, J.M.Perilla, J.R.Ganser-Pornillos, B.K.Johnson, M.C.Pornillos, O.Vogt, V.M.

(2018) Nature 560: 509-512


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Capsid protein p24
A
231Human immunodeficiency virus type 1 group M subtype B (isolate NY5)Mutation(s): 4 
Gene Names: gag
Find proteins for P12493 (Human immunodeficiency virus type 1 group M subtype B (isolate NY5))
Go to UniProtKB:  P12493
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
IHP
Query on IHP

Download SDF File 
Download CCD File 
A
INOSITOL HEXAKISPHOSPHATE
C6 H18 O24 P6
IMQLKJBTEOYOSI-GPIVLXJGSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.984 Å
  • R-Value Free: 0.284 
  • R-Value Work: 0.236 
  • Space Group: P 6
Unit Cell:
Length (Å)Angle (°)
a = 90.649α = 90.00
b = 90.649β = 90.00
c = 56.614γ = 120.00
Software Package:
Software NamePurpose
MOLREPphasing
PHENIXrefinement
HKL-2000data scaling
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesR01-AI129678
National Institutes of Health/National Institute of General Medical SciencesUnited StatesU54-GM103297

Revision History 

  • Version 1.0: 2018-08-01
    Type: Initial release
  • Version 1.1: 2018-08-15
    Type: Data collection, Database references
  • Version 1.2: 2018-09-05
    Type: Data collection, Database references
  • Version 1.3: 2019-02-20
    Type: Author supporting evidence, Data collection