6BDP

Schistosoma mansoni (Blood Fluke) Sulfotransferase/CIDD-0000071 (Compound 9c) Complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.43 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.170 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Design, Synthesis, and Characterization of Novel Small Molecules as Broad Range Antischistosomal Agents.

Rugel, A.Tarpley, R.S.Lopez, A.Menard, T.Guzman, M.A.Taylor, A.B.Cao, X.Kovalskyy, D.Chevalier, F.D.Anderson, T.J.C.Hart, P.J.LoVerde, P.T.McHardy, S.F.

(2018) ACS Med Chem Lett 9: 967-973


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Sulfotransferase oxamniquine resistance protein
A
259Schistosoma mansoniMutation(s): 0 
Gene Names: SULT-OR
Find proteins for G4VLE5 (Schistosoma mansoni)
Go to UniProtKB:  G4VLE5
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
A3P
Query on A3P

Download SDF File 
Download CCD File 
A
ADENOSINE-3'-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
WHTCPDAXWFLDIH-KQYNXXCUSA-N
 Ligand Interaction
DE4
Query on DE4

Download SDF File 
Download CCD File 
A
[2-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]-4-[[(3~{R})-1-(phenylmethyl)pyrrolidin-3-yl]amino]phenyl]methanol
C18 H22 N3 O3
WYXYMKUJUAYZSN-QGZVFWFLSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
CAS
Query on CAS
A
L-PEPTIDE LINKINGC5 H12 As N O2 SCYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.43 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.170 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 140.859α = 90.00
b = 39.456β = 90.00
c = 53.763γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
PHASERphasing
PHENIXrefinement
XDSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2017-10-24 
  • Released Date: 2018-10-03 
  • Deposition Author(s): Taylor, A.B.

Revision History 

  • Version 1.0: 2018-10-03
    Type: Initial release
  • Version 1.1: 2018-11-07
    Type: Data collection, Database references, Source and taxonomy