6BDC | pdb_00006bdc

Structure of Hcp1 from Flavobacterium johnsoniae

PDB DOI: https://doi.org/10.2210/pdb6BDC/pdb

Classification: PROTEIN TRANSPORT
Organism(s): Flavobacterium johnsoniae UW101
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2017-10-22 Released: 2017-12-27
Deposition Author(s): Bohn, A.J., Russell, A.B., Robinson, H., Mougous, J.D., Whitney, J.C.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.281 (Depositor), 0.287 (DCC)
R-Value Work:
0.248 (Depositor), 0.264 (DCC)
R-Value Observed:
0.252 (Depositor)

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This is version 1.2 of the entry. See complete history.

Literature

Structure of Hcp1 from Flavobacterium johnsoniae

Bohn, A.J., Russell, A.B., Robinson, H., Mougous, J.D., Whitney, J.C.

To be published.

Macromolecule Content

Total Structure Weight: 15.86 kDa
Atom Count: 869
Modeled Residue Count: 123
Deposited Residue Count: 136
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hcp1	A	136	Flavobacterium johnsoniae UW101	Mutation(s): 0 Gene Names: Fjoh_3262
UniProt
Find proteins for A5FET8 (Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / BCRC 14874 / CCUG 350202 / NBRC 14942 / NCIMB 11054 / UW101)) Explore A5FET8 Go to UniProtKB: A5FET8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A5FET8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.281 (Depositor), 0.287 (DCC)
R-Value Work: 0.248 (Depositor), 0.264 (DCC)
R-Value Observed: 0.252 (Depositor)

Space Group: P 6 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 79.021	α = 90
b = 79.021	β = 90
c = 82.913	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
SHELXDE	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2017-12-27

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	AI080609

Revision History (Full details and data files)

Version 1.0: 2017-12-27
Type: Initial release
Version 1.1: 2019-12-11
Changes: Author supporting evidence
Version 1.2: 2024-11-20
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.