6BDC | pdb_00006bdc

Structure of Hcp1 from Flavobacterium johnsoniae

• PDB DOI: https://doi.org/10.2210/pdb6BDC/pdb

• Classification: PROTEIN TRANSPORT
• Organism(s): Flavobacterium johnsoniae UW101
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2017-10-22 Released: 2017-12-27 
• Deposition Author(s): Bohn, A.J., Russell, A.B., Robinson, H., Mougous, J.D., Whitney, J.C.
• Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 
  0.281 (Depositor), 0.280 (DCC) 
• R-Value Work: 
  0.248 (Depositor), 0.260 (DCC) 
• R-Value Observed: 
  0.252 (Depositor) 

Literature

Structure of Hcp1 from Flavobacterium johnsoniae

Bohn, A.J., Russell, A.B., Robinson, H., Mougous, J.D., Whitney, J.C.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C6  (Explore in 3D)
Global Stoichiometry: Homo 6-mer - A6 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 15.86 kDa 
• Atom Count: 869 
• Modeled Residue Count: 123 
• Deposited Residue Count: 136 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hcp1	A	136	Flavobacterium johnsoniae UW101	Mutation(s): 0  Gene Names: Fjoh_3262
UniProt
Find proteins for A5FET8 (Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / BCRC 14874 / CCUG 350202 / NBRC 14942 / NCIMB 11054 / UW101)) Explore A5FET8  Go to UniProtKB:  A5FET8

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free:  0.281 (Depositor), 0.280 (DCC) 
• R-Value Work:  0.248 (Depositor), 0.260 (DCC) 
• R-Value Observed: 0.252 (Depositor) 

Space Group: P 6 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 79.021	α = 90
b = 79.021	β = 90
c = 82.913	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
SHELXDE	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2017-12-27 
Deposition Author(s): Bohn, A.J., Russell, A.B., Robinson, H., Mougous, J.D., Whitney, J.C.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	AI080609

Revision History  

• Version 1.0: 2017-12-27
  Type: Initial release
  
• Version 1.1: 2019-12-11
  Changes: Author supporting evidence
• Version 1.2: 2024-11-20
  Changes: Data collection, Database references, Structure summary