6BDA

Wild-type I-OnuI bound to A3G substrate (post-cleavage complex)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.88 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.191 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Wild-type I-OnuI bound to A3G substrate (post-cleavage complex)

Laforet, M.McMurrough, T.Brown, C.Zhang, K.Junop, M.Gloor, G.B.Edgell, D.R.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein 3/homing endonuclease-like protein fusion
A
307Ophiostoma novo-ulmi subsp. americanaMutation(s): 0 
Gene Names: HEG fusion (rps3)
Find proteins for Q4VWW5 (Ophiostoma novo-ulmi subsp. americana)
Go to UniProtKB:  Q4VWW5
Entity ID: 2
MoleculeChainsLengthOrganism
Cleaved Cognate DNA strand, +11 senseB14Ophiostoma novo-ulmi
Entity ID: 3
MoleculeChainsLengthOrganism
Cleaved cognate DNA strand, -11 senseC11Ophiostoma novo-ulmi
Entity ID: 4
MoleculeChainsLengthOrganism
Cleaved cognate DNA strand, -11 antisenseD15Ophiostoma novo-ulmi
Entity ID: 5
MoleculeChainsLengthOrganism
Cleaved cognate DNA strand, +11 antisenseE10Ophiostoma novo-ulmi
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download SDF File 
Download CCD File 
A, B, C
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.88 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.191 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 42.690α = 90.00
b = 68.980β = 90.00
c = 161.720γ = 90.00
Software Package:
Software NamePurpose
MOSFLMdata reduction
PHENIXrefinement
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-10-24
    Type: Initial release