6AY9

Structure of the native full-length HIV-1 capsid protein in complex with CPSF6 peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.242 
  • R-Value Observed: 0.244 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Characterization of HIV-1 capsid interactions with host cell factors

Gres, A.T.Kirby, K.A.Sarafianos, S.G.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HIV-1 capsid protein
A
231Human immunodeficiency virus 1Mutation(s): 0 
Gene Names: gag
Find proteins for B6DRA0 (Human immunodeficiency virus 1)
Go to UniProtKB:  B6DRA0
  • Find similar proteins by: Sequence   |   Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Cleavage and polyadenylation specificity factor subunit 6
B
12Homo sapiensMutation(s): 0 
Gene Names: CPSF6CFIM68
Find proteins for Q16630 (Homo sapiens)
Go to UniProtKB:  Q16630
NIH Common Fund Data Resources
PHAROS  Q16630
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
IOD
Query on IOD

Download CCD File 
A
IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
 Ligand Interaction
CL
Query on CL

Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.242 
  • R-Value Observed: 0.244 
  • Space Group: P 6
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 92.675α = 90
b = 92.675β = 90
c = 58.042γ = 120
Software Package:
Software NamePurpose
Aimlessdata scaling
Blu-Icedata collection
PHENIXrefinement
PDB_EXTRACTdata extraction
Aimlessdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI120860

Revision History 

  • Version 1.0: 2018-09-12
    Type: Initial release
  • Version 1.1: 2019-02-20
    Changes: Author supporting evidence, Data collection
  • Version 1.2: 2019-12-11
    Changes: Author supporting evidence