6AVK

Streptavidin bound to peptide-like compound KPM-6


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.186 
  • R-Value Work: 0.174 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Efficient Workflow for Screening DNA-encoded One Bead One Compound Libraries Using a Flow Cytometer

McEnaney, P.Dickson, P.Dang, V.MacConnell, A.Cavett, V.Reza, S.Park, H.Paegel, B.Kodadek, T.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Streptavidin
A, B
123Streptomyces avidiniiMutation(s): 0 
Find proteins for P22629 (Streptomyces avidinii)
Go to UniProtKB:  P22629
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
HDO
Query on HDO

Download SDF File 
Download CCD File 
B
1-hydroxydodecan-4-one
C12 H24 O2
ZWRNUBJKJQOMRO-UHFFFAOYSA-N
 Ligand Interaction
BZ4
Query on BZ4

Download SDF File 
Download CCD File 
A
N-[(2H-1,3-benzodioxol-5-yl)methyl]-2-({[(2H-1,3-benzodioxol-5-yl)methyl][2-(chloromethyl)-1,3-oxazole-4-carbonyl]amino}methyl)-N-[(4-carbamoyl-1,3-oxazol-2-yl)methyl]-1,3-oxazole-4-carboxamide
C31 H25 Cl N6 O10
ZSCMZNFJKJBCQT-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.186 
  • R-Value Work: 0.174 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 47.310α = 90.00
b = 93.520β = 90.00
c = 104.450γ = 90.00
Software Package:
Software NamePurpose
BUSTERrefinement
SCALAdata scaling
PHENIXphasing
iMOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-08-08
    Type: Initial release