6ASK | pdb_00006ask

Crystal Structure of apo Flavin monooxygenase CmoJ (earlier YtnJ)

PDB DOI: https://doi.org/10.2210/pdb6ASK/pdb

Classification: FLAVOPROTEIN, OXIDOREDUCTASE
Organism(s): Bacillus subtilis subsp. subtilis str. 168
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2017-08-24 Released: 2018-08-29
Deposition Author(s): Bhandari, D.M., Zhao, B., Li, P., Begley, T.P.
Funding Organization(s): Robert A. Welch Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.69 Å
R-Value Free:
0.190 (Depositor), 0.193 (DCC)
R-Value Work:
0.174 (Depositor), 0.177 (DCC)
R-Value Observed:
0.175 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Flavin mediated Pummerer type rearrangement in cysteine salvage pathway

Bhandari, D.M., Krishnamoorthy, K., Zhao, B., Li, P., Begley, T.P.

To be published.

Macromolecule Content

Total Structure Weight: 49.67 kDa
Atom Count: 3,708
Modeled Residue Count: 430
Deposited Residue Count: 444
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative monooxygenase MoxC	A	444	Bacillus subtilis subsp. subtilis str. 168	Mutation(s): 0 Gene Names: moxC, ytnJ, BSU29310 EC: 1.14 (PDB Primary Data), 1.14.14 (UniProt)
UniProt
Find proteins for O34974 (Bacillus subtilis (strain 168)) Explore O34974 Go to UniProtKB: O34974
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O34974
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.69 Å
R-Value Free: 0.190 (Depositor), 0.193 (DCC)
R-Value Work: 0.174 (Depositor), 0.177 (DCC)
R-Value Observed: 0.175 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 86.751	α = 90
b = 86.751	β = 90
c = 195.42	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
iMOSFLM	data processing
iMOSFLM	data scaling
PHENIX	model building

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2018-08-29

Deposition Author(s):

Funding Organization	Location	Grant Number
Robert A. Welch Foundation	United States	A-0034

Revision History (Full details and data files)

Version 1.0: 2018-08-29
Type: Initial release
Version 1.1: 2023-10-04
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.