6AQ7

Structure of POM6 FAB fragment complexed with mouse PrPc


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.83 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.197 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural characterization of POM6 Fab and mouse prion protein complex identifies key regions for prions conformational conversion.

Baral, P.K.Swayampakula, M.Aguzzi, A.James, M.N.G.

(2018) FEBS J. 285: 1701-1714


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Major prion protein
A
122Mus musculusMutation(s): 0 
Gene Names: Prnp (Prn-p, Prp)
Find proteins for P04925 (Mus musculus)
Go to UniProtKB:  P04925
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
POM6 FAB Heavy CHAIN
H
214N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
POM6 FAB light CHAIN
L
216N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, L
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
TCE
Query on TCE

Download SDF File 
Download CCD File 
H
3,3',3''-phosphanetriyltripropanoic acid
3-[bis(2-carboxyethyl)phosphanyl]propanoic acid
C9 H15 O6 P
PZBFGYYEXUXCOF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.83 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.197 
  • Space Group: P 2 21 21
Unit Cell:
Length (Å)Angle (°)
a = 72.040α = 90.00
b = 82.420β = 90.00
c = 103.700γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
PHENIXrefinement
XDSdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Alberta innovatesCanada--

Revision History 

  • Version 1.0: 2018-04-04
    Type: Initial release
  • Version 1.1: 2018-05-16
    Type: Data collection, Database references
  • Version 1.2: 2018-11-07
    Type: Data collection, Source and taxonomy