6ALT

Solution structure of a DNA dodecamer with 5-methylcytosine at the 3rd and 9th position


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 18 
  • Conformers Submitted: 11 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Solution structure of a DNA dodecamer with 5-methylcytosine at the 3rd and 9th position

Gruber, D.R.Hoppins, J.J.Miears, H.L.Zharkov, D.O.Smirnov, S.L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(*(DC5)P*GP*(DMC)P*GP*AP*AP*TP*TP*(DMC)P*GP*CP*(DG3))-3')A,B12synthetic construct
Small Molecules
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
5CM
Query on 5CM
A, B
DNA LINKINGC10 H16 N3 O7 PDC
DCZ
Query on DCZ
A, B
DNA OH 5 prime terminusC9 H13 N3 O4

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Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 18 
  • Conformers Submitted: 11 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationCountryGrant Number
National Science Foundation (United States)United States1244641

Revision History 

  • Version 1.0: 2017-09-20
    Type: Initial release
  • Version 1.1: 2017-09-27
    Type: Author supporting evidence