6AL2

Crystal structure of a Membrane protein insertase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.218 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

2.8-angstrom crystal structure of Escherichia coli YidC revealing all core regions, including flexible C2 loop.

Tanaka, Y.Izumioka, A.Abdul Hamid, A.Fujii, A.Haruyama, T.Furukawa, A.Tsukazaki, T.

(2018) Biochem. Biophys. Res. Commun. 505: 141-145


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Membrane protein insertase YidC
A, B
551Escherichia coli O45:K1 (strain S88 / ExPEC)Mutation(s): 0 
Gene Names: yidC
Find proteins for B7MGC7 (Escherichia coli O45:K1 (strain S88 / ExPEC))
Go to UniProtKB:  B7MGC7
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
OLC
Query on OLC

Download SDF File 
Download CCD File 
A
(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
1-Oleoyl-R-glycerol
C21 H40 O4
RZRNAYUHWVFMIP-GDCKJWNLSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.218 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 42.910α = 78.03
b = 76.190β = 82.61
c = 91.950γ = 78.05
Software Package:
Software NamePurpose
XSCALEdata scaling
PHENIXrefinement
XDSdata reduction
PHASERphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of ScienceJapanJP26119007
Japan Society for the Promotion of ScienceJapanJP26291023
Japan Society for the Promotion of ScienceJapanJP18H02405
Japan Society for the Promotion of ScienceJapanJP17H05669
Japan Society for the Promotion of ScienceJapanJP17K19528
Japan Society for the Promotion of ScienceJapanJP16K14713
Japan Society for the Promotion of ScienceJapanJP15H01537
Japan Society for the Promotion of ScienceJapanJP15K06972

Revision History 

  • Version 1.0: 2018-11-07
    Type: Initial release