6AI6

Crystal structure of SpCas9-NG


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.243 
  • R-Value Work: 0.218 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Engineered CRISPR-Cas9 nuclease with expanded targeting space

Nishimasu, H.Shi, X.Ishiguro, S.Gao, L.Hirano, S.Okazaki, S.Noda, T.Abudayyeh, O.O.Gootenberg, J.S.Mori, H.Oura, S.Holmes, B.Tanaka, M.Seki, M.Hirano, H.Aburatani, H.Ishitani, R.Ikawa, M.Yachie, N.Zhang, F.Nureki, O.

(2018) Science 361: 1259-1262


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
CRISPR-associated endonuclease Cas9/Csn1
A
1372Streptococcus pyogenes serotype M1Mutation(s): 8 
Gene Names: cas9 (csn1)
EC: 3.1.-.-
Find proteins for Q99ZW2 (Streptococcus pyogenes serotype M1)
Go to UniProtKB:  Q99ZW2
Entity ID: 2
MoleculeChainsLengthOrganism
RNA (81-MER)B81Streptococcus pyogenes
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (28-MER)C28Streptococcus pyogenes
Entity ID: 4
MoleculeChainsLengthOrganism
DNA (8-MER)D8Streptococcus pyogenes
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K
Query on K

Download SDF File 
Download CCD File 
A, B
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.243 
  • R-Value Work: 0.218 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 177.377α = 90.00
b = 68.568β = 111.51
c = 187.968γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
MOLREPphasing
PHENIXrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-10-31
    Type: Initial release