6ADM

Anthrax Toxin Receptor 1-bound full particles of Seneca Valley Virus in acidic conditions


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.84 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Seneca Valley virus attachment and uncoating mediated by its receptor anthrax toxin receptor 1

Cao, L.Zhang, R.Liu, T.Sun, Z.Hu, M.Sun, Y.Cheng, L.Guo, Y.Fu, S.Hu, J.Li, X.Yu, C.Wang, H.Chen, H.Li, X.Fry, E.E.Stuart, D.I.Qian, P.Lou, Z.Rao, Z.

(2018) Proc. Natl. Acad. Sci. U.S.A. 115: 13087-13092


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
VP1
A
258Senecavirus AMutation(s): 0 
Find proteins for A0A1U9IRU2 (Senecavirus A)
Go to UniProtKB:  A0A1U9IRU2
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
VP3
C
237Senecavirus AMutation(s): 0 
Find proteins for A0A1U9IRU2 (Senecavirus A)
Go to UniProtKB:  A0A1U9IRU2
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
VP2
B
267Senecavirus AMutation(s): 0 
Find proteins for A0A1U9IRU2 (Senecavirus A)
Go to UniProtKB:  A0A1U9IRU2
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
VP4
D
58Senecavirus AMutation(s): 0 
Find proteins for A0A1U9IRU2 (Senecavirus A)
Go to UniProtKB:  A0A1U9IRU2
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
Anthrax toxin receptor 1
R
185Homo sapiensMutation(s): 1 
Gene Names: ANTXR1 (ATR, TEM8)
Find proteins for Q9H6X2 (Homo sapiens)
Go to Gene View: ANTXR1
Go to UniProtKB:  Q9H6X2
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download SDF File 
Download CCD File 
R
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.84 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-08-01 
  • Released Date: 2019-02-06 
  • Deposition Author(s): Lou, Z.Y., Cao, L.

Funding OrganizationLocationGrant Number
National Basic Research Program of China(973 Program)China--

Revision History 

  • Version 1.0: 2019-02-06
    Type: Initial release