6AB5

Cryo-EM structure of T=1 Penaeus vannamei nodavirus


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.7 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.

Chen, N.C.Yoshimura, M.Miyazaki, N.Guan, H.H.Chuankhayan, P.Lin, C.C.Chen, S.K.Lin, P.J.Huang, Y.C.Iwasaki, K.Nakagawa, A.Chan, S.I.Chen, C.J.

(2019) Commun Biol 2: 72-72


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Capsid protein
A
368Penaeus vannamei nodavirusMutation(s): 0 
Find proteins for A5H7Q8 (Penaeus vannamei nodavirus)
Go to UniProtKB:  A5H7Q8
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.7 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (Taiwan)Taiwan105-2311-B-213-001-MY3

Revision History 

  • Version 1.0: 2019-03-20
    Type: Initial release