6AAX

Crystal structure of TFB1M and h45 with SAM in homo sapiens


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.994 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.222 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of TFB1M and h45 with SAM in homo sapiens

Liu, X.Shen, S.Wu, P.Li, F.Wu, J.Zhang, H.Shi, Y.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Dimethyladenosine transferase 1, mitochondrial
A, C
319Homo sapiensMutation(s): 0 
Gene Names: TFB1M
EC: 2.1.1.-
Find proteins for Q8WVM0 (Homo sapiens)
Go to Gene View: TFB1M
Go to UniProtKB:  Q8WVM0
Entity ID: 2
MoleculeChainsLengthOrganism
RNA (28-mer)B,D28Homo sapiens
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PEG
Query on PEG

Download SDF File 
Download CCD File 
A
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
SAM
Query on SAM

Download SDF File 
Download CCD File 
A, C
S-ADENOSYLMETHIONINE
C15 H22 N6 O5 S
MEFKEPWMEQBLKI-FCKMPRQPSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.994 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.222 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 104.120α = 90.00
b = 104.120β = 90.00
c = 449.378γ = 120.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
MOLREPphasing
PDB_EXTRACTdata extraction
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (China)China31330018
Chinese Academy of SciencesChinaXDPB10, XDB08010101

Revision History 

  • Version 1.0: 2019-06-05
    Type: Initial release