6AAE

Crystal structure of Chloramphenicol-Metabolizaing Enzyme EstDL136


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.641 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.189 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of chloramphenicol-metabolizing enzyme EstDL136 from a metagenome.

Kim, S.H.Kang, P.A.Han, K.T.Lee, S.W.Rhee, S.K.

(2019) PLoS ONE 14: e0210298-e0210298


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Esterase
A, B
317uncultured bacteriumMutation(s): 0 
Gene Names: estDL136
EC: 3.1.1.1
Find proteins for G3CR02 (uncultured bacterium)
Go to UniProtKB:  G3CR02
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PEG
Query on PEG

Download SDF File 
Download CCD File 
A, B
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
1PE
Query on 1PE

Download SDF File 
Download CCD File 
A, B
PENTAETHYLENE GLYCOL
PEG400
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.641 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.189 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 118.943α = 90.00
b = 153.586β = 90.00
c = 44.243γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
PHENIXrefinement
PHENIXphasing
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Rural Development AdministrationKorea, Republic OfPJ01325801
National Research Foundation (Korea)Korea, Republic Of2017R1A2B4002860
Rural Development AdministrationKorea, Republic OfPJ 0109390

Revision History 

  • Version 1.0: 2019-02-06
    Type: Initial release