6A97

Crystal structure of MHC-like MILL2

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.148 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.213 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history. 

Literature

Structure of MHC class I-like MILL2 reveals heparan-sulfate binding and interdomain flexibility.

Kajikawa, M., Ose, T., Fukunaga, Y., Okabe, Y., Matsumoto, N., Yonezawa, K., Shimizu, N., Kollnberger, S., Kasahara, M., Maenaka, K.

(2018) Nat Commun 9: 4330-4330


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
MHC I-like leukocyte 2 long form
A, C
292Mus musculusMutation(s): 0 
Gene Names: Mill2
Find proteins for Q8HWE5 (Mus musculus)
Go to UniProtKB:  Q8HWE5
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Beta-2-microglobulin
B, D
100Mus musculusMutation(s): 0 
Gene Names: B2m
Find proteins for P01887 (Mus musculus)
Go to UniProtKB:  P01887
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4
Download SDF File 
Download CCD File 
C
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.148 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.213 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 89.633α = 90.00
b = 93.497β = 90.00
c = 138.123γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
PHENIXrefinement
HKL-2000data reduction
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots


View more in-depth experimental data

Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Ministry of Education, Culture, Sports, Science and Technology (Japan)Japan20057020

Revision History 

  • Version 1.0: 2018-12-05
    Type: Initial release