6A94

Crystal structure of 5-HT2AR in complex with zotepine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.236 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structures of the 5-HT2A receptor in complex with the antipsychotics risperidone and zotepin

Kimura, T.K.Asada, H.Inoue, A.Kadji, F.M.N.Im, D.Mori, C.Arakawa, T.Hirata, K.Nomura, YNomura, N.Aoki, J.Iwata, S.Shimamura, T.

(2019) Nat.Struct.Mol.Biol. 26: 121-128


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
5-hydroxytryptamine receptor 2A,Soluble cytochrome b562
A, B
376Escherichia coliHomo sapiens
This entity is chimeric
Mutation(s): 6 
Gene Names: cybC, HTR2A (HTR2)
Find proteins for P0ABE7 (Escherichia coli)
Go to UniProtKB:  P0ABE7
Find proteins for P28223 (Homo sapiens)
Go to Gene View: HTR2A
Go to UniProtKB:  P28223
Small Molecules
Ligands 6 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
A6L
Query on A6L

Download SDF File 
Download CCD File 
B
2,3-dihydroxypropyl (9Z)-octadec-9-enoate
monoolein
C21 H40 O4
RZRNAYUHWVFMIP-KTKRTIGZSA-N
 Ligand Interaction
PLM
Query on PLM

Download SDF File 
Download CCD File 
B
PALMITIC ACID
C16 H32 O2
IPCSVZSSVZVIGE-UHFFFAOYSA-N
 Ligand Interaction
1PE
Query on 1PE

Download SDF File 
Download CCD File 
A
PENTAETHYLENE GLYCOL
PEG400
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
 Ligand Interaction
ZOT
Query on ZOT

Download SDF File 
Download CCD File 
A, B
2-(3-chloranylbenzo[b][1]benzothiepin-5-yl)oxy-N,N-dimethyl-ethanamine
C18 H18 Cl N O S
HDOZVRUNCMBHFH-UHFFFAOYSA-N
 Ligand Interaction
CLR
Query on CLR

Download SDF File 
Download CCD File 
A, B
CHOLESTEROL
C27 H46 O
HVYWMOMLDIMFJA-DPAQBDIFSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.236 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 279.180α = 90.00
b = 42.220β = 92.16
c = 91.710γ = 90.00
Software Package:
Software NamePurpose
XSCALEdata scaling
PHASERphasing
XDSdata reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-02-13
    Type: Initial release